Related projects (ours and other)

pyAFQ paper

We are developing a paper about pyAFQ. Some of the scripts used to produce plots in the paper can be found here:

https://github.com/36000/pyAFQ-scripts

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

https://github.com/nipreps/dmriprep

DIPY

Diffusion imaging in Python is a software library for analysis of diffusion MRI, and for computational neuroanatomy. We heavily rely on DIPY in everythng that we do.

https://dipy.org/

FURY

Free unified rendering in Python is a software library for fast, performant interactive and composable visualization of scientific data. This library is a DIPY spin off, that now extends well beyond neuroscience applications.

https://fury.gl

Cloudknot

Cloudknot is a python library designed to run your existing python code on AWS Batch.

https://richford.github.io/cloudknot/

BIDS

The Brain Imaging Data Structure is a specification that describes how to organize and query datasets of brain imaging data. In our work, we rely on BIDS and extend it to organize derivatives from our analysis software.

https://bids-specification.readthedocs.io/en/stable/